TRON Bioinformatics
- 76 followers
- Mainz, Germany
- http://tron-mainz.de/
Popular repositories Loading
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tronflow-mutect2
tronflow-mutect2 PublicNextflow pipeline for Mutect2 somatic variant calling best practices
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covigator-ngs-pipeline
covigator-ngs-pipeline PublicA Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
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splice2neo
splice2neo PublicR package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
Repositories
- tronflow-bam-preprocessing Public
Nextflow pipeline for the preprocessing of BAM files based on GATK best practices. Marking duplicates, realignment around indels, base quality score recalibration (BQSR) and reporting of metrics are optional to maintain flexibility for different use cases.
TRON-Bioinformatics/tronflow-bam-preprocessing’s past year of commit activity - test-datasets Public Forked from nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
TRON-Bioinformatics/test-datasets’s past year of commit activity - neofox Public
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
TRON-Bioinformatics/neofox’s past year of commit activity - snakemake Public Forked from snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
TRON-Bioinformatics/snakemake’s past year of commit activity - bioconda-recipes Public Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
TRON-Bioinformatics/bioconda-recipes’s past year of commit activity - arcasHLA Public Forked from RabadanLab/arcasHLA
Fast and accurate in silico inference of HLA genotypes from RNA-seq
TRON-Bioinformatics/arcasHLA’s past year of commit activity
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