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Added next steps with minimal code examples.

Not entirely sure on the D2D code example tbh. Also thankful for review on Copasi.

Closes #213

@PaulJonasJost PaulJonasJost self-assigned this Jan 20, 2026
@PaulJonasJost PaulJonasJost added the documentation Improvements or additions to documentation label Jan 20, 2026
Contribute to the Benchmark Collection
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Before diving into parameter estimation, consider contributing your PEtab problem to the community! The `PEtab Benchmark Collection <https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab>`_ is a curated repository of parameter estimation problems that helps:
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I'd move that to the end. Only published problems are added to the benchmark collection.

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I see the point 👍🏼

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Left it in the offboarding as the first thing, paired with that it should have enough visibility


**Documentation:** https://amici.readthedocs.io/

Model Simulation with COPASI
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Not sure that fits here, as there is no direct PEtab support. But there is https://github.com/copasi/python-petab-importer.

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Would leave that up to @fbergmann to decide (and potentially adjust?)

PaulJonasJost and others added 2 commits January 20, 2026 17:27
Co-authored-by: Daniel Weindl <dweindl@users.noreply.github.com>
@PaulJonasJost PaulJonasJost merged commit 78f9853 into main Jan 21, 2026
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