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@KChen-lab

KChen-lab

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  1. Monopogen Monopogen Public

    SNV calling from single cell sequencing

    HTML 120 24

  2. METAFlux METAFlux Public

    HTML 85 13

  3. bindSC bindSC Public

    Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data

    R 39 7

  4. Cyclum Cyclum Public

    Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations

    Python 24 5

  5. SCMER SCMER Public

    Marker Selection by matching manifolds and elastic net

    HTML 23 4

  6. Texomer Texomer Public

    Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data

    R 21 8

Repositories

Showing 10 of 38 repositories
  • Abema_fas_Ovarian Public

    This repository includes scripts to generate figures of the paper that are generated with GeoMx DSP WTA data.

    KChen-lab/Abema_fas_Ovarian’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Feb 2, 2026
  • HPV-specific-TCR Public

    Code for the paper on HPV16-specific TCRs

    KChen-lab/HPV-specific-TCR’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Feb 2, 2026
  • ABMACT Public

    ABMACT project code

    KChen-lab/ABMACT’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 4, 2025
  • ICKG Public
    KChen-lab/ICKG’s past year of commit activity
    Jupyter Notebook 2 1 1 0 Updated Nov 5, 2025
  • ST_Comparison Public

    Codes of images in Comparison of imaging based single-cell resolution spatial transcriptomics profiling platforms using formalin-fixed paraffin-embedded tumor samples

    KChen-lab/ST_Comparison’s past year of commit activity
    R 2 GPL-3.0 0 0 0 Updated Oct 28, 2025
  • KChen-lab/immune-knowledgegraph.github.io’s past year of commit activity
    HTML 0 1 0 0 Updated Aug 15, 2025
  • KChen-lab/transition-cells-identification’s past year of commit activity
    Jupyter Notebook 12 MIT 2 2 0 Updated Feb 11, 2025
  • Monopogen Public

    SNV calling from single cell sequencing

    KChen-lab/Monopogen’s past year of commit activity
    HTML 120 GPL-3.0 24 52 (1 issue needs help) 1 Updated Nov 11, 2024
  • SCMER Public

    Marker Selection by matching manifolds and elastic net

    KChen-lab/SCMER’s past year of commit activity
    HTML 23 MIT 4 0 0 Updated Oct 22, 2024
  • INVAX_manuscript Public

    Scripts/Codes for INVAX project paper

    KChen-lab/INVAX_manuscript’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Oct 19, 2024

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