Files and code used for the PheEWAS manuscript. Note the three files discovery_catbin_finalexp.txt, discovery_cont_phenotype_exp.txt, and phenotype_vars.txt are QC'ed and data type organized files used for this study.
The Code folder holds all code used for QC and analysis and result_files_code has my code I used to create figures and the files for those figures. The two discovery and one phenotype file included on the main page are the QC files of the variables used in all sequencial analyses.