relink.py: Accept specific directories and/or files to process

[samsrabin]

This gives relink.py the ability to accept an arbitrary number of directories and/or files to relink, given as positional arguments.

Resolves issue #5. Includes PR #13.

E.g.:

python3 relink.py /path/to/inputdata/source1/ /path/to/inputdata/source2/file2.txt --target-root /path/to/target/

usage: relink.py [-h] [--target-root TARGET_ROOT] [-v | -q] [--dry-run] [--timing] [items_to_process ...]

Find files owned by a user and replace them with symbolic links to a target directory.

positional arguments:
  items_to_process      One or more (directories to search for) files (default: /glade/campaign/cesm/cesmdata/cseg/inputdata/)

options:
  -h, --help            show this help message and exit
  --target-root TARGET_ROOT
                        The root of the directory tree where files should be moved to (default:
                        /glade/campaign/collections/gdex/data/d651077/cesmdata/inputdata/)
  -v, --verbose         Enable verbose output
  -q, --quiet           Quiet mode (show only warnings and errors)
  --dry-run             Show what would be done without making any changes
  --timing              Measure and display the execution time

[codecov-commenter]

Codecov Report

❌ Patch coverage is 99.50678% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 99.26%. Comparing base (ecc9a4a) to head (5e854b9).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
tests/relink/test_find_owned_files_scandir.py	97.29%	2 Missing ⚠️
relink.py	98.90%	1 Missing ⚠️
tests/relink/test_handle_non_dir.py	99.50%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #15      +/-   ##
==========================================
+ Coverage   99.23%   99.26%   +0.03%     
==========================================
  Files          10       12       +2     
  Lines         780     1353     +573     
==========================================
+ Hits          774     1343     +569     
- Misses          6       10       +4     

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[jedwards4b]

Nevermind my comment, I see that both are supported.