From 749450f5a3a5207da053686c6c392b08551cc71f Mon Sep 17 00:00:00 2001
From: Gisli Magnusson <gmagnusson@genedx.com>
Date: Sat, 7 Feb 2026 14:18:30 +0000
Subject: [PATCH] fix(ENGKNOW-2947):  Fix update meta data for non existing
 folders.

---
 gortools/src/test/java/gorsat/UTestGorif.java             | 1 +
 gortools/src/test/java/gorsat/UTestNorif.java             | 1 +
 model/src/main/java/org/gorpipe/gor/model/FileReader.java | 4 ++--
 3 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/gortools/src/test/java/gorsat/UTestGorif.java b/gortools/src/test/java/gorsat/UTestGorif.java
index 630c14c6..85677119 100644
--- a/gortools/src/test/java/gorsat/UTestGorif.java
+++ b/gortools/src/test/java/gorsat/UTestGorif.java
@@ -118,6 +118,7 @@ public static Collection<Object[]> data() throws IOException {
                 {"Invalid file path missing -dh", "gorif not_exists.gor", null, GorParsingException.class},
                 {"Empty file missing -dh", "gorif " + testEmptyFile, null, GorParsingException.class},
                 {"Invalid file path with -dh", "gorif -dh col1,col2 not_exists.gor", "col1\tcol2\n", null},
+                {"Invalid nested file path with -dh", "gorif -dh col1,col2 some/not_exists.gor", "col1\tcol2\n", null},
                 {"Invalid file path with invalid -dh value", "gorif -dh col1 not_exists.gor", null, GorParsingException.class},
                 {"Both invalid and valid file path", "gorif " + testFileGor1 + " not_exists.gor",
                 """
diff --git a/gortools/src/test/java/gorsat/UTestNorif.java b/gortools/src/test/java/gorsat/UTestNorif.java
index e08e2de6..184dad15 100644
--- a/gortools/src/test/java/gorsat/UTestNorif.java
+++ b/gortools/src/test/java/gorsat/UTestNorif.java
@@ -80,6 +80,7 @@ public static Collection<Object[]> data() throws IOException {
                 {"Nested query started with norif", "norif <(nor " + testTsvFile1 + ")",
                     expectedHeader + "chrN\t0\tA\t1\tA\n", null},
                 {"Invalid file path", "norif -dh col1,col2 not_exists.tsv", HEADER_PREFIX+ "col1\tcol2\n", null},
+                {"Invalid nested file path", "norif -dh col1,col2 some/not_exists.tsv", HEADER_PREFIX+ "col1\tcol2\n", null},
                 {"Invalid file path missing -dh", "norif not_exists.tsv", null, GorParsingException.class},
                 {"Empty file missing -dh", "norif " + testEmptyFile, null, GorParsingException.class},
                 {"Invalid file path with invalid -dh value", "norif -dh col1 not_exists.tsv", null, GorParsingException.class},
diff --git a/model/src/main/java/org/gorpipe/gor/model/FileReader.java b/model/src/main/java/org/gorpipe/gor/model/FileReader.java
index 87a8214d..09e407a6 100644
--- a/model/src/main/java/org/gorpipe/gor/model/FileReader.java
+++ b/model/src/main/java/org/gorpipe/gor/model/FileReader.java
@@ -23,6 +23,7 @@
 package org.gorpipe.gor.model;
 
 import com.google.common.base.Strings;
+import org.gorpipe.exceptions.GorException;
 import org.gorpipe.exceptions.GorSystemException;
 import org.gorpipe.gor.driver.DataSource;
 import org.gorpipe.gor.driver.meta.SourceReference;
@@ -364,7 +365,6 @@ public Stream<SourceRef> prepareSources(Stream<SourceRef> sources) {
      * NOTE: This can be expensive, so it should be used with care.  This is only needed for
      *       (shared)filesystems (not object storage).
      * @param path
-     * @throws IOException
      */
     public void updateFileSystemMetaData(String path) throws IOException {
         if (PathUtils.isLocal(path)) {
@@ -389,7 +389,7 @@ public boolean existsWithMetaDataUpdate(String path) {
             try {
                 // If the file does not exist, we try to update the metadata.
                 updateFileSystemMetaData(path);
-            } catch (IOException e) {
+            } catch (IOException | GorException e) {
                 log.warn("Could not update file system metadata for path: {}", path, e);
                 return false;
             }